NYUAD XNAT User Documentation Logo

Getting Started

  • What is NYUAD XNAT?
  • Getting Started with XNAT Documentation

Working with XNAT

  • Accessing XNAT
  • Data Upload Procedures
  • Understanding the Prearchive
  • Transferring Data Between Projects
  • Resolving UID Errors During Archiving
  • Install XNAT Desktop Client
  • XNAT Navigation Basics
  • Project Management
  • Enabling Pipelines for Your Project
  • Running Pipelines on XNAT
  • Running Pipelines Across Multiple Subjects

Understanding MRI Data

  • Understanding Data Structure
  • BIDS Format

XNAT Pipelines

  • XNAT Pipelines Overview
  • dcm2niix
  • dcm2bids
  • dcm2hcp (Under Development)
  • MRIQC
  • ari-validator
  • fMRIPrep
  • TractoFlow
  • HCP (Under Development)

Data Download Methods

  • Download via Browser
  • Download via Desktop Client
  • XNAT API with Python
  • Download via MATLAB

Support

  • Frequently Asked Questions
  • Troubleshooting Guide
  • Data Loss and Recovery
  • Contributing to this Documentation
  • Contact Information
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