HCP (Under Development)

Note

For step-by-step instructions on running any pipeline, see Running Pipelines on XNAT. To enable pipelines for your project, see Enabling Pipelines for Your Project. For running pipelines across multiple subjects in parallel, see Running Pipelines Across Multiple Subjects.

The HCP pipeline provides Human Connectome Project-style processing for multi-modal connectome analysis.

Overview

The HCP pipeline will provide: - HCP-style structural and functional preprocessing - Surface-based analysis workflows - Multi-modal integration - Connectome-ready derivatives

Development Status: This pipeline is currently under development and not yet available for use.

Planned Features

Processing Capabilities: - Structural preprocessing with FreeSurfer integration - Functional preprocessing with surface registration - Multi-modal data integration - Connectome Workbench compatibility

Input Requirements: - HCP-formatted data (or organized structural/functional data) - High-resolution structural images (T1w, T2w) - Functional MRI data (task, resting-state) - Diffusion MRI data (optional)

Output Structure: - HCP-style derivatives - Surface-based functional data - Volume and surface registration - Connectome matrices and metrics

How to Run

For general instructions on running pipelines, see: Running Pipelines on XNAT

Note: This pipeline is not yet available. Please check back for updates or contact support for development status.

Alternative Workflows

While the HCP pipeline is under development, consider these alternatives:

Next Steps