NYUAD XNAT User Documentation

Getting Started

What is NYUAD XNAT?
Getting Started with XNAT Documentation

Working with XNAT

Accessing XNAT
Data Upload Procedures
Understanding the Prearchive
Transferring Data Between Projects
Resolving UID Errors During Archiving
Install XNAT Desktop Client
Enabling Pipelines for Your Project
Running Pipelines on XNAT
Running Pipelines Across Multiple Subjects

Understanding MRI Data

Understanding Data Structure
BIDS Format

XNAT Pipelines

XNAT Pipelines Overview
dcm2niix
dcm2bids
dcm2hcp (Under Development)
MRIQC
ari-validator
fMRIPrep
TractoFlow
HCP (Under Development)

Data Download Methods

Download via Browser
Download via Desktop Client
Download via Python
Download via MATLAB

Support

Frequently Asked Questions
Troubleshooting Guide
Data Loss and Recovery
Contributing to this Documentation
Contact Information

Coming Soon

XNAT Navigation Basics
Project Management

NYUAD XNAT User Documentation

Index

Index

© Copyright 2025, Puti Wen, Soumen Mohanty.

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